Protein Alignment pb and Hoxc5

DIOPT Version :9

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 257
• Identity: 73/257 - (28%)
• Similarity: 104/257 - (40%)
• Gaps: 93/257 - (36%)

  Fly    40 CGGAGVVGGV-------GGVGVSVGQPGIGQQGVPPVPSVLMVNKM--------------TPNCD 83
            ||..|....|       ||:.:|:..|       ||.||    |.:              .|.|.
  Rat    24 CGNYGSASEVQASRYCYGGLDLSITFP-------PPAPS----NSLHGVDMAANPRAHPDRPACS 77

  Fly    84 KRSADTAYWMTASEGGFIN--------SQPSM---AEFLNHLSPESPKIGTPVGSGAIGGVGVNV 137
            ..:| ..:.:...|...:|        ::|::   |:....:..|..:.|.|.|
  Rat    78 AAAA-PGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAG----------- 130

  Fly   138 NVNVGVGVGYPVGVVPQTPDGMDSVPE-YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRL 201
                          :.|.|    :.|: ||||.:...|.::..                   :|.
  Rat   131 --------------LSQPP----APPQIYPWMTKLHMSHETDG-------------------KRS 158

  Fly   202 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDD 263
            ||:||..|.||||||||||:||.|.||||||.:|.|.|||:|:||||||||.|:.:..|:.:
  Rat   159 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	COG5576	168..274	CDD:227863	43/96 (45%)
		Homeobox	202..254	CDD:278475	38/51 (75%)
Hoxc5	NP_001101586.1	COG5373	65..>142	CDD:227665	14/106 (13%)
		Homeobox	158..212	CDD:395001	38/53 (72%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.810