Protein Alignment pb and Hoxc5

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 257
• Identity: 73/257 - (28%)
• Similarity: 104/257 - (40%)
• Gaps: 93/257 - (36%)

  Fly    40 CGGAGVVGGV-------GGVGVSVGQPGIGQQGVPPVPSVLMVNKM--------------TPNCD 83
            ||..|....|       ||:.:|:..|       ||.||    |.:              .|.|.
  Rat    24 CGNYGSASEVQASRYCYGGLDLSITFP-------PPAPS----NSLHGVDMAANPRAHPDRPACS 77

  Fly    84 KRSADTAYWMTASEGGFIN--------SQPSM---AEFLNHLSPESPKIGTPVGSGAIGGVGVNV 137
            ..:| ..:.:...|...:|        ::|::   |:....:..|..:.|.|.|
  Rat    78 AAAA-PGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAG----------- 130

  Fly   138 NVNVGVGVGYPVGVVPQTPDGMDSVPE-YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRL 201
                          :.|.|    :.|: ||||.:...|.::..                   :|.
  Rat   131 --------------LSQPP----APPQIYPWMTKLHMSHETDG-------------------KRS 158

  Fly   202 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDD 263
            ||:||..|.||||||||||:||.|.||||||.:|.|.|||:|:||||||||.|:.:..|:.:
  Rat   159 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	39/55 (71%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	39/55 (71%)