DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and rx2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571301.2 Gene:rx2 / 30473 ZFINID:ZDB-GENE-990415-237 Length:327 Species:Danio rerio


Alignment Length:350 Identity:76/350 - (21%)
Similarity:127/350 - (36%) Gaps:106/350 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 HLSPE----------SPKIGTPVGSGAIGGVGVNVNVNVGVGVGY---------PVGVVPQTPDG 158
            ||||:          |.:....:|.|.:.|:...|: ::.|.:|:         |:|......|.
Zfish     2 HLSPDTMNMVDDGCLSTESYHDLGKGGVSGISSRVH-SIDVILGFSKDQDPLLEPIGTHKVDEDQ 65

  Fly   159 MD--------------SVPEYPWMKEK--------KTSRKSSN----NNNQGDNSITEFVPENGL 197
            ::              .:|:....::.        .|.:..::    .:|...:|.:..:|:...
Zfish    66 LEEQEKQVNSDPYSHLQIPDQTQQQQSVYHDTGLFSTDKCDADLGDPRSNVESDSRSPDIPDEDQ 130

  Fly   198 P----RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTL 258
            |    ||.||.:|..||.|||:.|..:.|.....|.|:|..::|.|.:|:|||||||.|.:||..
Zfish   131 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 195

  Fly   259 SKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTP----------S 313
            ..|......||                     .:.|.:.|....|....:|:.|          |
Zfish   196 MDTGTMKLHDS---------------------PIRSFNRPPMAPNVGPMSNSLPLDPWLSSPLSS 239

  Fly   314 ATNNNPSAGNLTPNSSLE-------------TGISSNL--MGSTTVSASNVISADSSVASSVSLD 363
            ||..:...|.:.|..||:             .|:..|:  |.........|.:....:       
Zfish   240 ATPMHSIPGFMGPGQSLQPTYTAHPGFLNTSPGMMQNMQPMPPPPYQCQPVFNDKYPL------- 297

  Fly   364 EDIEESSPI---KVKKKDDGQVIKK 385
            ||::.||.|   ::|.|:..|.:.|
Zfish   298 EDVDRSSSIAALRMKAKEHIQSMDK 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/55 (47%)
rx2NP_571301.2 Octapeptide motif 37..44 1/7 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..73 3/24 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..139 7/38 (18%)
Homeodomain 136..192 CDD:459649 26/55 (47%)
OAR 302..316 CDD:461067 5/13 (38%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 304..317 4/12 (33%)
Nuclear localization signal. /evidence=ECO:0000255 310..314 1/3 (33%)

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