DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxb8b

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571256.1 Gene:hoxb8b / 30420 ZFINID:ZDB-GENE-980526-291 Length:247 Species:Danio rerio


Alignment Length:137 Identity:53/137 - (38%)
Similarity:72/137 - (52%) Gaps:41/137 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRI 229
            :|||:.:.|.|                       ||.|..|:..|.|||||||.||.||.|.|||
Zfish   135 FPWMRPQATGR-----------------------RRGRQTYSRYQTLELEKEFLFNPYLTRKRRI 176

  Fly   230 EIAASLDLTERQVKVWFQNRRMKHKRQ------TLSKTDDED-----------NKDSLKGDDDQS 277
            |::.:|.|||||||:||||||||.|::      ..||.:.|:           ::....|::| |
Zfish   177 EVSHALALTERQVKIWFQNRRMKWKKEHNKDKFPSSKAEQEEIERERQEGSQVSEKHTSGEED-S 240

  Fly   278 DSNSNSK 284
            :::||||
Zfish   241 EASSNSK 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 45/122 (37%)
Homeobox 202..254 CDD:278475 35/51 (69%)
hoxb8bNP_571256.1 Antp-type hexapeptide 134..139 2/3 (67%)
Homeobox 149..201 CDD:278475 35/51 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..247 9/46 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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