Protein Alignment pb and Hoxb1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001094022.1
• Gene: Hoxb1 / 303491
• RGDID: 1310298
• Length: 297
• Species: Rattus norvegicus
• Alignment Length: 334
• Identity: 89/334 - (26%)
• Similarity: 123/334 - (36%)
• Gaps: 104/334 - (31%)

  Fly    33 TSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPV---PSVLMVN--KMTPN------CDKRS 86
            ||.|...........|....|..:....:.|....||   ||.|.|:  ...|:      |:...
  Rat    26 TSFPPSSAPAVDSYAGESRYGGGLPSSALQQNSGYPVQQPPSSLGVSFPSSAPSGYAPAACNPSY 90

  Fly    87 ADTAYW---MTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYP 148
            ..:.|:   .:..:||:.           |.|....::|....|...||||..         .||
  Rat    91 GPSQYYSMGQSEGDGGYF-----------HPSSYGAQLGGLPDSYGAGGVGSG---------PYP 135

  Fly   149 VGVVPQTPDGMD---------------------SVPE------YPWMKEKKTSRKSSNNNNQGDN 186
               .||.|.|.:                     |.|.      :.|||.|:...|::..:..|
  Rat   136 ---PPQPPYGTEQTSNFASAYDLLSEDKESSCSSEPSSLTARTFDWMKVKRNPPKTAKVSELG-- 195

  Fly   187 SITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRM 251
                    .|.|..|||.:|..||.||||||||||||.|.||:||||:|:|.|.|||:|||||||
  Rat   196 --------LGTPGGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 252

  Fly   252 KHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATN 316
            |.|                             |:..:|..:|:.. |.....:.|..::..:.|:
  Rat   253 KQK-----------------------------KREREGGRVPAGP-PGCPKEAAGEASDQSACTS 287

  Fly   317 NNPSAGNLT 325
            ...|..::|
  Rat   288 PEASPSSIT 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	39/55 (71%)
Hoxb1	NP_001094022.1	None