DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxc4a

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571197.1 Gene:hoxc4a / 30345 ZFINID:ZDB-GENE-990415-112 Length:268 Species:Danio rerio


Alignment Length:337 Identity:97/337 - (28%)
Similarity:138/337 - (40%) Gaps:126/337 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 SVLM----VNKMTPNCDKRSADT-------AYWMTASEGGFINSQ----PSMAEF----LNHLSP 116
            |.||    ::...|.|::.|.::       .|:..|.:.|:.:..    |..|.:    .|..|.
Zfish     5 SYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYSRARDSGYQHHHQELYPPRASYQERQYNCASI 69

  Fly   117 ESPKI----GTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDS-----VPE-------- 164
            ..|..    |.| .:|.:.|.|.:.:....     |:.:.|.||....|     .||        
Zfish    70 PEPDTQRGHGLP-HAGHLLGKGQSASCEPP-----PLPLSPATPSAASSACNQATPEHPNSSASA 128

  Fly   165 -----YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLC 224
                 |||||:...|..:|:.|             ...|:|.|||||..|:||||||||:|:||.
Zfish   129 KQPVVYPWMKKIHVSTVNSSYN-------------GAEPKRSRTAYTRQQVLELEKEFHYNRYLT 180

  Fly   225 RPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQG 289
            |.||||||.||.|:|||:|:||||||||.|:         |::                      
Zfish   181 RRRRIEIAHSLVLSERQIKIWFQNRRMKWKK---------DHR---------------------- 214

  Fly   290 CELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADS 354
              ||:..:..|:|                             |||||   ||.|.||:.|::| :
Zfish   215 --LPNTKVRSSSS-----------------------------TGISS---GSNTSSAAGVVAA-A 244

  Fly   355 SVASSVSLDEDI 366
            |..:::|..||:
Zfish   245 STTNTMSASEDL 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 48/105 (46%)
Homeobox 202..254 CDD:278475 39/51 (76%)
hoxc4aNP_571197.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..129 13/64 (20%)
Antp-type hexapeptide 133..138 3/4 (75%)
Homeobox 157..210 CDD:278475 39/52 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..268 21/102 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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