DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxb4a

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571193.1 Gene:hoxb4a / 30340 ZFINID:ZDB-GENE-990415-105 Length:246 Species:Danio rerio


Alignment Length:178 Identity:64/178 - (35%)
Similarity:82/178 - (46%) Gaps:49/178 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 VVPQTPDGMDSVPE---------------YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRR 200
            |.|..|......|.               |||||:...:..|.|.:             .|.|:|
Zfish   102 VTPSPPPACGQTPTSQNTSTVSSRKDPVVYPWMKKVHVNIVSPNYS-------------GGEPKR 153

  Fly   201 LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDED 265
            .|||||..|:||||||||:|:||.|.||:|||.:|.|:|||:|:||||||||.|:         |
Zfish   154 SRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKK---------D 209

  Fly   266 NKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPS 313
            :|  |.....:|:|.|.:...|          |...||....:...||
Zfish   210 HK--LPNTKIRSNSASTNSSGC----------PTLCSNQSRASGPPPS 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 38/55 (69%)
hoxb4aNP_571193.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..125 4/22 (18%)
Antp-type hexapeptide 130..135 3/4 (75%)
Homeodomain 152..208 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..246 11/48 (23%)

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