DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxb2a

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571191.1 Gene:hoxb2a / 30338 ZFINID:ZDB-GENE-990415-103 Length:390 Species:Danio rerio


Alignment Length:376 Identity:131/376 - (34%)
Similarity:165/376 - (43%) Gaps:105/376 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 EGGFINSQPSMAEFL-------------------------NHLSPE-SPKIGT---PVGSGAIGG 132
            |.||||||||:||.|                         .|..|. ||..|.   |........
Zfish     8 EIGFINSQPSLAECLTSFPAVLESFQTSSIKDSTAIPPPFEHTIPSLSPCTGNQARPRSQKRTAS 72

  Fly   133 VGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRK------------------SSN 179
            .|:.:.........:..|..|.: .|.....|:|||||||:|:|                  ||.
Zfish    73 NGLQLRTQTAPPTQHQQGPAPLS-GGAPLAHEFPWMKEKKSSKKCPKPGATAAAAAASPSQASSG 136

  Fly   180 NNNQGDNSITEFVPENGL-----PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTE 239
            ....|..|.||.  :.||     .||||||||||||||||||||||||||||||:||||.|||||
Zfish   137 YTTAGLESPTEI--QGGLDNVSGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTE 199

  Fly   240 RQVKVWFQNRRMKHKRQTLSKTDDEDNK----DSLKGDDDQSDSNSNS-KKSCQGCELPSDD--- 296
            ||||||||||||||||||....|.::.:    |.|:|.|..|..:|.| :.|..|...||:.   
Zfish   200 RQVKVWFQNRRMKHKRQTTHHRDGQEGEPSGFDLLEGTDASSPYSSQSLEVSGSGSAAPSESETC 264

  Fly   297 -------------------------IPDSTSNSRGHNNNTPSATNNNP-------SAGNLTPNSS 329
                                     .|.|..::..|:...|:.|.:||       :||   |..|
Zfish   265 PTTAAYTNSSDKSQPTPEEGQASQPEPASVPDTAVHSPPYPTPTADNPTTMAEGRAAG---PEHS 326

  Fly   330 LETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEES--SPIKVKKKD 378
            .     :....:|::...|..|.||.:..|.:|...::.|  ||:...::|
Zfish   327 F-----TEPQDATSLPDLNFFSTDSCLQISDALSPSLQSSLDSPVDFSEED 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 53/55 (96%)
hoxb2aNP_571191.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..73 6/32 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..100 3/19 (16%)
Antp-type hexapeptide 103..108 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..155 14/48 (29%)
Homeodomain 159..215 CDD:459649 53/55 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..338 31/134 (23%)
PRK11907 237..>320 CDD:237019 15/82 (18%)

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