DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxa2b

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571181.1 Gene:hoxa2b / 30325 ZFINID:ZDB-GENE-990415-98 Length:363 Species:Danio rerio


Alignment Length:343 Identity:135/343 - (39%)
Similarity:165/343 - (48%) Gaps:78/343 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 EGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVN-------------VNVNVGVGVGYP 148
            |.||||||||:||.|...    |.:|....|.:|....::             .::|.|   .:|
Zfish     8 ETGFINSQPSLAECLTSF----PPVGDAFQSSSIKSSTLSHSTLIPPPFEQTIPSLNPG---SHP 65

  Fly   149 VGVVP-QTPDGMDSV------PEYPWMKEKKTSRKSSNNNN-------------QGDNSITEFVP 193
            ....| |.|:|...:      ||||||||||.|:|:...:.             ||...|::  .
Zfish    66 RHSRPKQNPNGSCPLPAASLPPEYPWMKEKKASKKNQTTSTAATTDPGPLYFSPQGSPEISD--G 128

  Fly   194 ENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTL 258
            .:|..||||||||||||||||||||||||||||||:||||.|||||||||||||||||||||||.
Zfish   129 GSGATRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 193

  Fly   259 SKTDDE-DNK-DSLKGDDDQSDSNS---NSKKSCQGCELPSDDIP------DSTSNSRGHNNNTP 312
            .|.:.. |.| .||:....:.|..|   ....:..|..|..:..|      .|..:..|||:::.
Zfish   194 CKENHHGDGKPPSLEEAGGRGDGKSFFEQVANNVSGALLEREGYPFQQNTLTSQQSQNGHNSDSQ 258

  Fly   313 SAT----NNNPSAGNLTPNSSLETGISSNLMGSTTVSAS---------------NVISADS---- 354
            |||    .:|.......||.|....|.:..|.....||.               ||.|.||    
Zfish   259 SATVSPLGSNDKHLKHFPNPSPTVPICTTTMAPDCASAQDNGSPSALDVSLQDFNVFSNDSCLHL 323

  Fly   355 SVASSVSLDEDIEESSPI 372
            |.|.|.||.|.::  |||
Zfish   324 SDAVSPSLSESVD--SPI 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 73/120 (61%)
Homeobox 202..254 CDD:278475 49/51 (96%)
hoxa2bNP_571181.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..132 22/94 (23%)
Antp-type hexapeptide 88..93 4/4 (100%)
Homeobox 137..189 CDD:278475 49/51 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..218 13/31 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..279 10/33 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594718
Domainoid 1 1.000 117 1.000 Domainoid score I5869
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 1 1.000 - - otm26381
orthoMCL 1 0.900 - - OOG6_110172
Panther 1 1.100 - - O PTHR45664
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2356
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.700

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