Protein Alignment pb and Hoxd4

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001099355.1
• Gene: Hoxd4 / 288153
• RGDID: 1309690
• Length: 251
• Species: Rattus norvegicus
• Alignment Length: 272
• Identity: 85/272 - (31%)
• Similarity: 103/272 - (37%)
• Gaps: 105/272 - (38%)

  Fly    36 PVGGCGGAGVVGGV---------GGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAY 91
            |.|| ||.|....:         .|.|.....||......||.|
  Rat    61 PFGG-GGPGPGSALPARGHGQEPSGPGSHYSAPGEPCPAPPPAP--------------------- 103

  Fly    92 WMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTP 156
                ..|....|||:        .|:.|..||.:...|:
  Rat   104 ----LPGARACSQPT--------GPKQPPPGTALKQPAV-------------------------- 130

  Fly   157 DGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNK 221
                   .||||  ||....|.|.|..|           |.|:|.|||||..|:||||||||||:
  Rat   131 -------VYPWM--KKVHVNSVNPNYTG-----------GEPKRSRTAYTRQQVLELEKEFHFNR 175

  Fly   222 YLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNK-DSLKGDDDQSDSNSNSKK 285
            ||.|.||||||.:|.|:|||:|:||||||||.|:         |:| .:.||      .:|:|..
  Rat   176 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK---------DHKLPNTKG------RSSSSSS 225

  Fly   286 SCQGCELPSDDI 297
            ||.....||..:
  Rat   226 SCSSSAAPSQHL 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	40/55 (73%)
Hoxd4	NP_001099355.1	Homeodomain	153..209	CDD:459649	40/55 (73%)