DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Hoxb9

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001093967.1 Gene:Hoxb9 / 287647 RGDID:1306158 Length:250 Species:Rattus norvegicus


Alignment Length:255 Identity:76/255 - (29%)
Similarity:98/255 - (38%) Gaps:75/255 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTAS 96
            |...||.|...|.:.....|...||..|.:..||.|                  :|::.|..|  
  Rat    53 QPKAPVFGASWAPLSPHASGSLPSVYHPYLQPQGAP------------------AAESRYLRT-- 97

  Fly    97 EGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDS 161
                            .|.| :|:.....|.|       ...|.....:|.|..::.|      .
  Rat    98 ----------------WLEP-APRAEAAPGQG-------QAAVKAEPLLGAPGELLKQ------G 132

  Fly   162 VPEYPWMKEKKTSRKSSNNNNQ---GDNSITEFVPENGLP---------------RRLRTAYTNT 208
            .|||  ..|....|::..:|.:   |||.|.|...:...|               |:.|..||..
  Rat   133 TPEY--SLETSAGREAVLSNQRAGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKY 195

  Fly   209 QLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKD 268
            |.|||||||.||.||.|.||.|:|..|:|:|||||:||||||||.|     |.:.|..|:
  Rat   196 QTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMK-----KMNKEQGKE 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 36/55 (65%)
Hoxb9NP_001093967.1 Hox9_act 1..172 CDD:461369 36/170 (21%)
Homeodomain 186..242 CDD:459649 37/60 (62%)

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