DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Dlx3

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001099302.1 Gene:Dlx3 / 287638 RGDID:1304875 Length:287 Species:Rattus norvegicus


Alignment Length:139 Identity:50/139 - (35%)
Similarity:74/139 - (53%) Gaps:25/139 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 NGLPRRL---RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ 256
            ||.|:::   ||.|::.||..|::.|...:||..|.|.|:||.|.||:.|||:||||||.|.|: 
  Rat   123 NGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK- 186

  Fly   257 TLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNN---N 318
             |.|..:...        :.|.:||:| .:|.  ..||..:.|::|:|      ||:.|.|   .
  Rat   187 -LYKNGEVPL--------EHSPNNSDS-MACN--SPPSPALWDTSSHS------TPAPTRNPLPP 233

  Fly   319 PSAGNLTPN 327
            |...:.:||
  Rat   234 PLPYSASPN 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 27/58 (47%)
Dlx3NP_001099302.1 DLL_N 27..107 CDD:463567
COG5576 <109..230 CDD:227863 46/125 (37%)
Homeodomain 130..186 CDD:459649 27/55 (49%)
Blue background indicates that the domain is not in the aligned region.

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