Protein Alignment pb and Hoxc4

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 91
• Identity: 51/91 - (56%)
• Similarity: 61/91 - (67%)
• Gaps: 13/91 - (14%)

  Fly   165 YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRI 229
            |||||:...|..:.|.|             .|.|:|.|||||..|:||||||||:|:||.|.|||
  Rat   136 YPWMKKIHVSTVNPNYN-------------GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRI 187

  Fly   230 EIAASLDLTERQVKVWFQNRRMKHKR 255
            |||.||.|:|||:|:||||||||.|:
  Rat   188 EIAHSLCLSERQIKIWFQNRRMKWKK 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	40/55 (73%)
Hoxc4	NP_001103354.1	Homeodomain	157..213	CDD:459649	40/55 (73%)