DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and Gbx1

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_056554.1 Gene:Gbx1 / 231044 MGIID:95667 Length:418 Species:Mus musculus


Alignment Length:380 Identity:91/380 - (23%)
Similarity:115/380 - (30%) Gaps:181/380 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MGTQIKSESPLNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPG--------IG------- 62
            :|.:.:||..::....:.|..|......||    |..||.|.|.|.||        ||       
Mouse    38 LGPRARSEPCVSARGARRGPGSAMQRAAGG----GAPGGSGGSSGGPGAAFSIDSLIGPPPPRSG 98

  Fly    63 ---------------------------QQGVPP----------------------VPSVLMVNKM 78
                                       ..|:||                      |||::.:...
Mouse    99 HLLYTGYPMFMPYRPLVLPQALAPAPLPAGLPPLAPLASFAGRLSNTFCAGLGQAVPSMVALTTA 163

  Fly    79 TPNCDKRSADTAYW----------MTASEGG---------------------------------- 99
            .|:.  .....||:          .|||...                                  
Mouse   164 LPSF--AEPPDAYYGPPELAAAAASTASRSNPEPAARRTDGALDAEELLPAREKVTEPPPPPPPH 226

  Fly   100 FINSQPSM-AEFLNHLSPE---SPKIGTPVGS-----------------------GAIGGVGVNV 137
            |..:.||: ||...:.|.|   .|..|.|.||                       ||:.|....:
Mouse   227 FSETFPSLPAEGKVYSSDEEKLEPPAGDPAGSEQEEEGSGGDSEDSFLDSSAGGPGALLGPKPKL 291

  Fly   138 NVNVGVGV--GYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRR 200
            ..:.|.|.  |.||.....||.|                 ||                     ||
Mouse   292 KGSPGTGAEEGTPVATGVTTPGG-----------------KS---------------------RR 318

  Fly   201 LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 255
            .|||:|:.||||||||||..|||....|.:||.:|.|:|.|||:||||||.|.||
Mouse   319 RRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 39/88 (44%)
Homeobox 202..254 CDD:278475 33/51 (65%)
Gbx1NP_056554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..90 15/55 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..320 27/143 (19%)
Homeobox 319..372 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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