DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Nkx1-2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_033149.1 Gene:Nkx1-2 / 20231 MGIID:104806 Length:305 Species:Mus musculus


Alignment Length:327 Identity:74/327 - (22%)
Similarity:109/327 - (33%) Gaps:121/327 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QVQTGQTSL---PVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSAD 88
            :|:.||.:.   |:|.......||.    |:..|.|..|.:..                ::..|:
Mouse    52 EVEAGQDACSGNPIGSQETPDAVGR----GIDPGSPVEGSEAE----------------EEEEAE 96

  Fly    89 TA-------YWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVG 146
            .|       .|....||                |||:..:.                        
Mouse    97 DAGRAHQPERWQGVHEG----------------SPEARAVA------------------------ 121

  Fly   147 YPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLL 211
              ||......:|:.:.|..|.....:..|..|:               ...|||.|||:|..||:
Mouse   122 --VGTEESGAEGLPASPGSPGSPRPRRRRAESS---------------CAKPRRARTAFTYEQLV 169

  Fly   212 ELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQ 276
            .||.:|...:||....|:.:|.||.|||.|||:||||||.|.|:|                    
Mouse   170 ALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-------------------- 214

  Fly   277 SDSNSNSKKSCQ-GCELPSDDIPDSTSNSRGHNNNTPSATNNNPS---AGNLTPNSSLETGISSN 337
               |..:..:.| |...|....|.:.:...|      |||.::|.   .|.| |..:..|..::|
Mouse   215 ---NPGADGAVQAGGGAPQPGTPGAVAGGGG------SATGSSPGPPVPGAL-PYQTFPTYPATN 269

  Fly   338 LM 339
            ::
Mouse   270 VL 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 30/55 (55%)
Nkx1-2NP_033149.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..158 27/182 (15%)
Homeodomain 157..213 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..257 14/75 (19%)

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