DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Pitx3

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_006526827.1 Gene:Pitx3 / 18742 MGIID:1100498 Length:388 Species:Mus musculus


Alignment Length:214 Identity:53/214 - (24%)
Similarity:89/214 - (41%) Gaps:48/214 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENG----LPRRLRTAYTNTQLLELEKEFHFN 220
            |:...:|.:.|.....:..:::.:...|:....||:|    ..||.||.:|:.||.|||..|..|
Mouse   106 DAGTPHPPLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRN 170

  Fly   221 KYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKK 285
            :|.....|.|||...:|||.:|:|||:|||.|.:::                      ..|...:
Mouse   171 RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR----------------------ERSQQAE 213

  Fly   286 SCQ--------GCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLET-GISSNLMGS 341
            .|:        |...|.:::....|    :.|..|.|         |.|..:.:| ..:.|.:..
Mouse   214 LCKGGFAAPLGGLVPPYEEVYPGYS----YGNWPPKA---------LAPPLAAKTFPFAFNSVNV 265

  Fly   342 TTVSASNVISADSSVASSV 360
            ..:::..|.|..||:|:|:
Mouse   266 GPLASQPVFSPPSSIAASM 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 28/55 (51%)
Pitx3XP_006526827.1 Homeodomain 149..205 CDD:459649 28/55 (51%)
PTZ00395 <228..>322 CDD:185594 15/70 (21%)
OAR 344..361 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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