DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and Nkx6-1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_659204.1 Gene:Nkx6-1 / 18096 MGIID:1206039 Length:365 Species:Mus musculus


Alignment Length:353 Identity:91/353 - (25%)
Similarity:140/353 - (39%) Gaps:98/353 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SSLDTTSMGTQIKSESPLNPL---QVQTG------------QTSLPVGGCGGAGV----VGGVGG 51
            ||....::.:..:.::||.|.   .:.||            ..|.|:|.....|:    .||:..
Mouse    18 SSPPLAALHSMAEMKTPLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGSHNPGGLKPPAAGGLSS 82

  Fly    52 VG-----VSVGQP-GIG---QQGVPPVPSVLMVNKMTPNCDKRSADTAYWMT------------- 94
            :|     :|...| ||.   .:...||.|...:...:|:....|:.::...|             
Mouse    83 LGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSASAAAAAAAAAA 147

  Fly    95 ----ASEGGFINSQPSMAEFLNHLSPESPKIG---TPVGSGAIGGVGVNVNVNVGVGVGY--PVG 150
                :|..|.:...|..:.    |||..|..|   :| .:.|:..||           .|  |:.
Mouse   148 AAAASSPAGLLAGLPRFSS----LSPPPPPPGLYFSP-SAAAVAAVG-----------RYPKPLA 196

  Fly   151 VVP-QTP---DGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLL 211
            .:| :||   .|:...|  ||     ...:.:...:||  ||  .:.::|..:..|..::..|:.
Mouse   197 ELPGRTPIFWPGVMQSP--PW-----RDARLACTPHQG--SI--LLDKDGKRKHTRPTFSGQQIF 250

  Fly   212 ELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ------TLSKTDDEDNKDSL 270
            .|||.|...|||..|.|..:|.||.:||.||||||||||.|.:::      |..|..|.:. :.|
Mouse   251 ALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSET-ERL 314

  Fly   271 KG-------DDDQS---DSNSNSKKSCQ 288
            ||       |||.:   |.||:.:|..|
Mouse   315 KGTSENEEDDDDYNKPLDPNSDDEKITQ 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 27/55 (49%)
Nkx6-1NP_659204.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 21/100 (21%)
Repressor domain. /evidence=ECO:0000250 102..269 43/193 (22%)
Homeodomain 236..294 CDD:459649 27/57 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 14/49 (29%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 12/37 (32%)

Return to query results.
Submit another query.