Protein Alignment pb and mls-2

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_508815.2
• Gene: mls-2 / 180751
• WormBaseID: WBGene00003377
• Length: 341
• Species: Caenorhabditis elegans
• Alignment Length: 231
• Identity: 62/231 - (26%)
• Similarity: 93/231 - (40%)
• Gaps: 46/231 - (19%)

  Fly   136 NVNVNVGVGVGYPVGVVPQTPDG--MDSVPEYPWMKEKK----TSRKSSNNNNQGDNSITEFVPE 194
            |.:||:....|.......:..||  .||....|...:.:    ..|.|.:..|..|       |.
 Worm   140 NPDVNIQSDNGEEKDEKSEGKDGETRDSTGGSPLESDAEDDDDIGRGSDDEANSSD-------PS 197

  Fly   195 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLS 259
            ....::.||.::.:|:.:||..|...:||....|..:|..|.|||.|||:||||||.|.|||  :
 Worm   198 QNRKKKTRTVFSRSQVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIWFQNRRNKFKRQ--A 260

  Fly   260 KTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAG-- 322
            :|||                   :..|.|........||.:|:.:      :|..|....|||
 Worm   261 QTDD-------------------TNISLQMHRANVFSIPATTALT------SPILTIPTTSAGVN 300

  Fly   323 --NL--TPNSSLETGISSNLMGSTTVSASNVISADS 354
              |:  :|..:..|..:..|.|..|:.|...::|.:
 Worm   301 MRNMISSPMDASATAAARFLFGFGTLQAQQNLNASA 336

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	24/55 (44%)
mls-2	NP_508815.2	Homeodomain	202..258	CDD:459649	24/55 (44%)