Protein Alignment pb and Y39B6A.1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_741698.1
• Gene: Y39B6A.1 / 180264
• WormBaseID: WBGene00012664
• Length: 735
• Species: Caenorhabditis elegans
• Alignment Length: 622
• Identity: 135/622 - (21%)
• Similarity: 228/622 - (36%)
• Gaps: 132/622 - (21%)

  Fly   168 MKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIA 232
            :|.:.:|..||::::...:|.:.            ::.:::...|.|.|.|.:|
 Worm   102 VKAQDSSSSSSSSSSSSSSSSSS------------SSSSSSSSSESEDEKHHHK----------- 143

  Fly   233 ASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDI 297
                               ||.::.|       .|...|.:...|.|:|:|..|.......|.:.
 Worm   144 -------------------KHAKKHL-------KKHHKKAESSSSSSSSSSSSSSSSSSSSSSES 182

  Fly   298 PDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVS----------------- 345
            .|...:.:.|........:....:.:.:.:||..:..||:...|::.|
 Worm   183 EDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAVKKHHK 247

  Fly   346 ---ASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIK--KEAVSTSSKASPFGYENSTPS 405
               :|:..|:.||.:||.|..||.:........||.    :|  |:|.|:||.:|.....:|:.|
 Worm   248 KAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKH----VKHHKKAASSSSSSSSSSSSSSSSS 308

  Fly   406 LVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTPLSDSNSGNGSGGGPAGGYFPGYYPSP 470
            ..|.....|..........|:.|||..:.||::.::.:..|.|:|.:.|              |.
 Worm   309 SSSSSESEDEKKKKKVHHKKSHGKKHHKKAASSSSSSSSSSSSSSSSSS--------------SE 359

  Fly   471 KQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLSPKPSSANF-- 533
            .:.::......|...:.......:...|::. |.||  ||:.|......|||:.....|.|:.
 Worm   360 SEDEKKHAPAHHEHHEHKDGAHHEHKEGEHH-EHAA--HHDEHGVHHRHHGEHHGTHHSPAHHGE 421

  Fly   534 ---HQNSQQQQQNDHFYYNYNDTNGTPYLNHQQQHH-HHAQHHQQQQHHQNHVADFEGPVNGPSN 594
               |.....:..:...::.:::::|  :.:|...|| ||.:||....||.:|......|.:...:
 Worm   422 HGTHHGHHGEHHHAPAHHGHHESHG--HGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHH 484

  Fly   595 FNNGAYYDNMSFQQQAQAHQHQTVVFQQQQPHQPAAINH--QH-MHHLGNGETYSALGLQMENCE 656
            ..:|.::.:.........|.|     ..:..|.||...|  :| .||..:||.:.|..
 Worm   485 GEHGTHHGHHGSHHSPAHHGH-----HGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPA------- 537

  Fly   657 GYNNFGAAGTGGGYYEAGQQPPIPATHGHGHHPHHVQVPAQAHAPIHAHHNSAAIPGGVGVGPPP 721
            .:.:.|..||..|::.:...|    .| ||||..|...|  ||...|.||.|    .||..|...
 Worm   538 HHGHHGEHGTHHGHHGSHHSP----AH-HGHHGEHHHAP--AHHGHHGHHGS----HGVHHGHHE 591

  Fly   722 SHIHGF---AINGGPAVQGQAFGNNGSTAAGTAAISG 755
            ||.||.   |.:|.....|...|::|   ||..|..|
 Worm   592 SHGHGHHAPAHHGHHGEHGVHHGHHG---AGYGAHHG 625

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	7/55 (13%)
Y39B6A.1	NP_741698.1	None