Protein Alignment pb and nob-1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001369824.1
• Gene: nob-1 / 176641
• WormBaseID: WBGene00003779
• Length: 243
• Species: Caenorhabditis elegans
• Alignment Length: 226
• Identity: 58/226 - (25%)
• Similarity: 85/226 - (37%)
• Gaps: 58/226 - (25%)

  Fly    74 MVNKMTPNCDKRSADTA-----YWMTAS------EGGFINSQPSMAEFLNHLSPESPKIGTPVGS 127
            |:|..:|...|.|..:.     :|.:|:      :|...:.:.|.......|:|.|..:..| |:
 Worm     8 MINNDSPEDSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMP-GT 71

  Fly   128 GAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEY------------------PWMKEKKTS 174
            ..:.|.|             |..:......||...|.|                  |:......|
 Worm    72 AGMYGFG-------------PSRMPTANEFGMMMNPVYTDFYQNPLASTGWYSYGQPYQFTANYS 123

  Fly   175 RKSSNNN--------NQGDNSITEFVPENGLP-------RRLRTAYTNTQLLELEKEFHFNKYLC 224
            ..|.:.|        ..|.::.|.......||       ::.|..|...|:..||.|:..|:||.
 Worm   124 IPSLDGNLSDITIPTTAGSSAATTPNAAMHLPWAISHDGKKKRQPYKKDQISRLEYEYSVNQYLT 188

  Fly   225 RPRRIEIAASLDLTERQVKVWFQNRRMKHKR 255
            ..||.|::|.|.|.|:||||||||||||.|:
 Worm   189 NKRRSELSAQLMLDEKQVKVWFQNRRMKDKK 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	28/55 (51%)
nob-1	NP_001369824.1	Homeodomain	163..219	CDD:459649	28/55 (51%)