Protein Alignment pb and vab-7

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_499401.1
• Gene: vab-7 / 176521
• WormBaseID: WBGene00006873
• Length: 247
• Species: Caenorhabditis elegans
• Alignment Length: 275
• Identity: 72/275 - (26%)
• Similarity: 99/275 - (36%)
• Gaps: 96/275 - (34%)

  Fly   148 PVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLE 212
            |:|||........:...:|:                 ||.      ::|..||.|||::..|:..
 Worm    41 PMGVVAAAAAAAAAGRHHPY-----------------DNR------DDGQMRRYRTAFSREQIGR 82

  Fly   213 LEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQS 277
            ||:||....|:.|..|.|:||.|:|.|..:||||||||||.|||.:.
 Worm    83 LEREFAKENYVSRKTRGELAAELNLPEGTIKVWFQNRRMKDKRQRVG------------------ 129

  Fly   278 DSNSNSKKSCQGCELPSDDIP-------------------------DSTSNSRGHNNNTPSATNN 317
                       |...|   .|                         .:|....|...|..|:|
 Worm   130 -----------GLAWP---FPPQMAAYMLNPFAYEMWMKTAAASQFGATGPGNGAYGNNGSST-- 178

  Fly   318 NPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQV 382
            :|||....|... ..|..|.|..::|.|.|:..|.|||.:.:.|.|:|  ||.|:.....
 Worm   179 SPSAAGSLPFLP-PLGFPSFLSQNSTKSPSSPHSDDSSKSKNTSSDDD--ESKPVNFSNS----- 235

  Fly   383 IKKEAVSTSSKASPF 397
                  .:||..||:
 Worm   236 ------PSSSSPSPY 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	29/55 (53%)
vab-7	NP_499401.1	Homeodomain	69..125	CDD:459649	29/55 (53%)