DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Meox1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_036012267.1 Gene:Meox1 / 17285 MGIID:103220 Length:271 Species:Mus musculus


Alignment Length:187 Identity:42/187 - (22%)
Similarity:57/187 - (30%) Gaps:54/187 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQP------GIGQQGVPPVPSVLMVNKMTPNCDKRS 86
            |:..|...||.||               :..|      ..|....||.|.........|      
Mouse     9 VRNPQPPAPVWGC---------------LRNPHSEDSSASGLSHYPPTPFSFHQKSDFP------ 52

  Fly    87 ADTAY--WMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVG-----VG 144
            |..||  :..:......:|.|......|...|..|:  ||.....|...|..:|:...     :|
Mouse    53 ATAAYPDFSASCLAATPHSLPRTERIFNEQHPAFPQ--TPDWHFPISEAGQRLNLGPAGSAREMG 115

  Fly   145 VGYPVGVVPQTPDGMDSVPEYPWM-------KEKKTSRKSSNNNNQGDNSITEFVPE 194
            .|.| |:|    ||...:.|...:       .|||:||:....:.|      ..|||
Mouse   116 AGSP-GLV----DGTAGLGEDCMVLGTIANETEKKSSRRKKERSGQ------SLVPE 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649
Meox1XP_036012267.1 None
Blue background indicates that the domain is not in the aligned region.

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