DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and GSX2

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_573574.2 Gene:GSX2 / 170825 HGNCID:24959 Length:304 Species:Homo sapiens


Alignment Length:288 Identity:79/288 - (27%)
Similarity:110/288 - (38%) Gaps:111/288 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 GCGGAGV-VGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGFIN 102
            |.||||. |.|.||.||:      |..|..|:..                           |..:
Human    79 GSGGAGAGVTGAGGSGVA------GAAGALPLLK---------------------------GQFS 110

  Fly   103 SQPSMAEFL-----------------NHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVG 150
            |.|..|:|.                 :|..|:.|  |:...:.|......     ....:|:|..
Human   111 SAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQP--GSAAAAAAAAAAAA-----AAAALGHPQH 168

  Fly   151 VVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGD----------NSITEFVPENGLPRRLRTAY 205
            ..|..                     ::...|..|          .|....|| ||  :|:|||:
Human   169 HAPVC---------------------TATTYNVADPRRFHCLTMGGSDASQVP-NG--KRMRTAF 209

  Fly   206 TNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ-------------- 256
            |:|||||||:||..|.||.|.||||||..|:|:|:|||:||||||:|||::              
Human   210 TSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKC 274

  Fly   257 -----TLSKTDDEDNKDSLKGDDDQSDS 279
                 ..::::|||:......:||:..|
Human   275 VGSQVHYARSEDEDSLSPASANDDKEIS 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 49/134 (37%)
Homeobox 202..254 CDD:278475 36/51 (71%)
GSX2NP_573574.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 116..151 6/36 (17%)
Homeobox 206..258 CDD:306543 36/51 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..304 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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