DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Lbx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_034821.2 Gene:Lbx1 / 16814 MGIID:104867 Length:282 Species:Mus musculus


Alignment Length:223 Identity:59/223 - (26%)
Similarity:86/223 - (38%) Gaps:43/223 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 GYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQL 210
            |..|.|: |..:|.|.:..:...:..|..|||                        |||:||.|:
Mouse    98 GLEVSVL-QAAEGRDGMTIFGQRQTPKKRRKS------------------------RTAFTNHQI 137

  Fly   211 LELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDD 275
            .||||.|.:.|||....|.:||..|.||..||..||||||.|.||.......|.::...| |...
Mouse   138 YELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKL-GPSG 201

  Fly   276 QSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMG 340
            |.|.            :...::..::..|.|..........:.|.:..|.|.:....|     .|
Mouse   202 QMDI------------VALAELEQNSEASGGGGGGGCGRAKSRPGSPALPPGAPQAPG-----GG 249

  Fly   341 STTVSASNVISADSSVASSVSLDEDIEE 368
            ...:|.::.::...:.:...|.||:.||
Mouse   250 PLQLSPASPLTDQRASSQDCSEDEEDEE 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 29/55 (53%)
Lbx1NP_034821.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
Homeodomain 126..182 CDD:459649 32/79 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..282 13/73 (18%)
Blue background indicates that the domain is not in the aligned region.

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