Protein Alignment pb and Hoxd1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_034597.2
• Gene: Hoxd1 / 15429
• MGIID: 96201
• Length: 328
• Species: Mus musculus
• Alignment Length: 264
• Identity: 81/264 - (30%)
• Similarity: 114/264 - (43%)
• Gaps: 56/264 - (21%)

  Fly    32 QTSLPVGGCGGAGVVGGVGGVGVSVGQP------GIGQQGVPPVPSVLMVNKMTPNCDKRSADTA 90
            |.:.|:|...||    .|..:.::..:|      |..|..||...:............:|.|..|
Mouse    41 QPAFPLGSGDGA----FVSCLPLATARPTPSPPAGPAQSPVPQPAAPRYAPCTLEGAYERGAAPA 101

  Fly    91 YWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPV--GSGAI--GGVGVNVNVNVGVGV------ 145
               :|:|.||:.|.|:. :|...|...:.:.|..|  .:.|:  ||....::..|....
Mouse   102 ---SAAEYGFLGSGPAF-DFPGALGRAADEGGAHVHYATSAVFSGGGSFLLSGQVDFAAFGEPGP 162

  Fly   146 ----------GYP---------VGVVPQTPDGMDSVP----EYPWMKEKKTSRKSSNNNNQGDNS 187
                      |:|         .|..|:......|:|    .:.|||.|:.:.|.|..:..|..|
Mouse   163 FPACLKEPADGHPGPFQTVSPAPGACPKPASPTSSLPAAHSTFEWMKVKRNAPKKSKLSEYGATS 227

  Fly   188 ITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMK 252
                 |    |..:||.::..||.||||||||||||.|.||||||..|.|.:.|||:||||||||
Mouse   228 -----P----PSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMK 283

  Fly   253 HKRQ 256
            .|::
Mouse   284 QKKR 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	36/55 (65%)
Hoxd1	NP_034597.2	PRK12323	<11..217	CDD:481241	38/183 (21%)
		Antp-type hexapeptide	204..209		1/4 (25%)
		Homeodomain	233..286	CDD:459649	36/52 (69%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	304..328