DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Hoxb8

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_034591.1 Gene:Hoxb8 / 15416 MGIID:96189 Length:243 Species:Mus musculus


Alignment Length:143 Identity:52/143 - (36%)
Similarity:72/143 - (50%) Gaps:36/143 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 DGMDSVPE----YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEF 217
            :|.:..|.    :|||:.:..:.:                      ||.|..|:..|.|||||||
Mouse   123 EGSEQSPSPTQLFPWMRPQAAAGR----------------------RRGRQTYSRYQTLELEKEF 165

  Fly   218 HFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQT------LSKTDDED-NKDSLK---G 272
            .||.||.|.||||::.:|.|||||||:||||||||.|::.      .||.:.|: .|:.|:   .
Mouse   166 LFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKEKLERAPE 230

  Fly   273 DDDQSDSNSNSKK 285
            ..:|.|:....||
Mouse   231 TAEQGDAQKGDKK 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 44/115 (38%)
Homeobox 202..254 CDD:278475 35/51 (69%)
Hoxb8NP_034591.1 Antp-type hexapeptide 134..139 2/4 (50%)
Homeobox 150..203 CDD:395001 35/52 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..243 7/39 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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