DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and Hoxb3

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_034588.2 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus


Alignment Length:359 Identity:104/359 - (28%)
Similarity:144/359 - (40%) Gaps:79/359 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQP-SMAEFLN- 112
            ||.....|..|.|..| ||.|.......:..:. :|||       .|.....|:.| :.::.|| 
Mouse    16 GGYSSYPGSNGFGYDG-PPQPPFQAATHLEGDY-QRSA-------CSLQSLGNAAPHAKSKELNG 71

  Fly   113 -----HLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSV---PEYPWMK 169
                 .|:||  .:..|.||........:...|...|.|......|:...|.:|.   ..:||||
Mouse    72 SCMRPGLAPE--PLPAPPGSPPPSAAPTSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMK 134

  Fly   170 EKKTSRKSSNNN--------------------------------NQGDNSITEFVPENGLPRRLR 202
            |.:.:.|..|::                                ..||.|    .|.:...:|.|
Mouse   135 ESRQTSKLKNSSPGTAEGCGGGGGGGGGGGGGGGGSSGGGGGGGGGGDKS----PPGSAASKRAR 195

  Fly   203 TAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNK 267
            ||||:.||:|||||||||:|||||||:|:|..|:|:|||:|:||||||||:|:...:|     ..
Mouse   196 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK-----GL 255

  Fly   268 DSLKGDDDQSDSNSNSKKSCQG------CELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNL-- 324
            .|..|....:.|.....:|..|      ...||.|.|...:..:||.|.....:|..|.....  
Mouse   256 ASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQPPLKGCGA 320

  Fly   325 ------TPNSSLETGI---SSNLMGSTTVSASNV 349
                  ||.|..|..:   :....|:.|:..|.|
Mouse   321 PQKYPPTPASEYEPHVLQANGGAYGTPTMQGSPV 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 40/55 (73%)
Hoxb3NP_034588.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 13/62 (21%)
Antp-type hexapeptide 129..134 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 7/62 (11%)
Homeodomain 192..248 CDD:459649 40/55 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 5/31 (16%)
DUF4074 369..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.