DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Hoxa10

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_032289.2 Gene:Hoxa10 / 15395 MGIID:96171 Length:416 Species:Mus musculus


Alignment Length:342 Identity:86/342 - (25%)
Similarity:115/342 - (33%) Gaps:129/342 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TSLPVG--GCG---------------GAGVVGGVGGVGVSVG-------------------QPGI 61
            :.||.|  .||               |.|..||.||:|....                   :|..
Mouse    68 SDLPYGLQSCGLFPALGSKRNEAPSPGGGGGGGSGGLGPGTHGYAPAPLDLWLDAPRSCRMEPPD 132

  Fly    62 G------------QQGVPPVPSVLMVNKMTPNCD-----KRSADTAYWMTASEGGFINSQPSMAE 109
            |            ||..||.|..........:|.     |..:....:..|.:....::...:|.
Mouse   133 GPPPPQPQPQQQQQQPPPPPPQPPQPQPQATSCSFAQNIKEESSYCLYDAADKCPKGSAAADLAP 197

  Fly   110 FLNHLSPESPKIGTPVGS--GAIGGVGV----NVNVNVGVGVGYPVG---------VVPQTPDG- 158
            |     |..|   .|.|.  ||..||.|    .::...|...|:..|         ..|..|.| 
Mouse   198 F-----PRGP---PPDGCALGASSGVPVPGYFRLSQAYGTAKGFGSGGGGTQQLASPFPAQPPGR 254

  Fly   159 ---------------------MDSVP-----------------------------EYPWMKEKKT 173
                                 :||.|                             ..|....|.:
Mouse   255 GFDPPPALASGSTEAAGKERVLDSTPPPTLVCTGGGGSQGDEEAHASSSAAEELSPAPSENSKAS 319

  Fly   174 SRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLT 238
            ..|.|..:::|:|:......::|  |:.|..||..|.|||||||.||.||.|.||:||:.|:.||
Mouse   320 PEKDSLGSSKGENAANWLTAKSG--RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 382

  Fly   239 ERQVKVWFQNRRMKHKR 255
            :||||:||||||||.|:
Mouse   383 DRQVKIWFQNRRMKLKK 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 36/55 (65%)
Hoxa10NP_032289.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..60
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..167 15/85 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 228..345 17/118 (14%)
Homeodomain 343..399 CDD:459649 36/55 (65%)
Blue background indicates that the domain is not in the aligned region.

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