DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and Gsx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:267 Identity:80/267 - (29%)
Similarity:119/267 - (44%) Gaps:64/267 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 QGVPP------VPSVLMVNKMTPN-CDKRSAD----TAYWMTASEGGFINSQPSMAEFLNHLSPE 117
            :|.||      ||....::.::|. |..|.|.    ....:|||:   ::..|. ...|..|...
Mouse    22 EGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQ---LHGPPG-PPALPLLKAS 82

  Fly   118 SPKIGTPVGSGAIGGV-GVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKK---TSRKSS 178
            .|..|:......:|.. .|:..|..|.........:.||        .||....::   .|..||
Mouse    83 FPPFGSQYCHAPLGRQHSVSPGVAHGPAAAAAAAALYQT--------SYPLPDPRQFHCISVDSS 139

  Fly   179 NNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVK 243
            :|.          :|.:   :|:|||:|:|||||||:||..|.||.|.||||||..|:|:|:|||
Mouse   140 SNQ----------LPSS---KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVK 191

  Fly   244 VWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSC-QGCELPS----------DDI 297
            :||||||:|||::.             ||.:.:..:.:.:.... |||:..|          |::
Mouse   192 IWFQNRRVKHKKEG-------------KGSNHRGGAGAGAGGGAPQGCKCSSLSSAKCSEDDDEL 243

  Fly   298 PDSTSNS 304
            |.|.|:|
Mouse   244 PMSPSSS 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 38/55 (69%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 147..203 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 13/63 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.