DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Gbx2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_034392.1 Gene:Gbx2 / 14472 MGIID:95668 Length:348 Species:Mus musculus


Alignment Length:268 Identity:78/268 - (29%)
Similarity:102/268 - (38%) Gaps:66/268 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 SLPVGGCGGAGVVGGVGGVGVSVGQ-PGIGQQGVPPVPSVLMVNKMTP-------NCDKRSADTA 90
            |||.|.|  :.:..|:......:.. || |....|.........|..|       |.||..|..|
Mouse    85 SLPTGFC--SSLAQGMALTSTLMATLPG-GFSASPQHQEAAAARKFAPQPLPGGGNFDKAEALQA 146

  Fly    91 YWMTASEG-GFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQ 154
               .|.:| .|:..:.|:..|         .....|.:..:|.|.         |.|.....|..
Mouse   147 ---DAEDGKAFLAKEGSLLAF---------SAAEAVQASLVGAVR---------GQGKDESKVED 190

  Fly   155 TPDGMDSVPEYPWMKEKKTSRK-----SSNNNNQGDNSITEFVP------------------ENG 196
            .|.|          ||:..|.:     ||::|..|..:..|..|                  ..|
Mouse   191 DPKG----------KEESFSLESDVDYSSDDNLPGQTAHKEEDPGHALEETPQSGGAAGSTTSTG 245

  Fly   197 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKT 261
            ..||.|||:|:.||||||||||..|||....|.:||.:|.|:|.|||:||||||.|.||......
Mouse   246 KNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNA 310

  Fly   262 DDEDNKDS 269
            :.:..:.|
Mouse   311 NSKTGEPS 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 35/55 (64%)
Gbx2NP_034392.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..81
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..139 5/27 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..251 17/90 (19%)
Homeodomain 248..304 CDD:459649 35/55 (64%)
Blue background indicates that the domain is not in the aligned region.

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