DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and LOC1277926

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_317438.4 Gene:LOC1277926 / 1277926 VectorBaseID:AGAMI1_003079 Length:596 Species:Anopheles gambiae


Alignment Length:321 Identity:79/321 - (24%)
Similarity:121/321 - (37%) Gaps:85/321 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CSSLDTTSMGT-----QIKSESPLNPLQVQTGQTSLPVGGCGGAGVVGG--------VGGVGVSV 56
            ||:.|:||..:     .|.|.|..:........||.|.|..........        :.|...:.
Mosquito   260 CSTQDSTSAPSPATYGDIASPSSASSAMTTPATTSSPTGSVYDYSRKASALDHRAALLNGFSAAA 324

  Fly    57 GQPGIGQQGVPPVPSVLMVN-------KMTPNCDKRS-ADTAYWMTASEGGFINSQPSMAEFLNH 113
            ..|.:.::         ::|       |:..:..|.: |..|....|:.....::.|.:......
Mosquito   325 SYPKLHEE---------IINSHRKFQAKLIESQTKAALAAAATAAAAAASATPHNMPPLGSLCKT 380

  Fly   114 LSPESPKIGTPV-GSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPD-------------------G 158
            :|    :||..| |:|::.|.|...|.....|.|.|....| ||.                   |
Mosquito   381 VS----QIGQHVAGTGSLNGSGSATNGASNGGSGAPATAKP-TPKPIPKPAPSSETNGSSSQDAG 440

  Fly   159 MDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFV--------PENGLPR---------------- 199
            |:|..:   .|.:.:|.|..:.|  |.|....:|        |.:| ||                
Mosquito   441 MESSDD---AKSETSSTKDGSEN--GSNLWPAWVYCTRYSDRPSSG-PRYRRTKQPKEKGDSEEK 499

  Fly   200 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSK 260
            |.|||::|.||..|:.||:.|:||...||..::|.|.|.|.|:|:||||:|.|.|:.:..|
Mosquito   500 RPRTAFSNAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQNKRAKIKKSSSEK 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 28/71 (39%)
LOC1277926XP_317438.4 None

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