DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Scr

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_311616.2 Gene:Scr / 1272726 VectorBaseID:AGAMI1_014121 Length:372 Species:Anopheles gambiae


Alignment Length:303 Identity:94/303 - (31%)
Similarity:118/303 - (38%) Gaps:89/303 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 PLNPLQVQ-TGQTSLPVGGCGGAGV----VGGVGG-------VGVSVGQPG---IGQQGVP---- 67
            |..|.|.. :.|:..|:.|.|...|    .|.|||       |..:..||.   :.||..|    
Mosquito    57 PGTPHQAHYSPQSYNPLAGAGATSVNSASTGAVGGGHQSTDMVDYTQLQPQKFLLSQQQQPQSAL 121

  Fly    68 -----------PVPSVLMVNKMTPNCDKRSADTAYWMTASEG--GFINSQPSMAEFLNHLSP--- 116
                       |.....::|....|......|.:   |||.|  |..:......|....|||   
Mosquito   122 TSQSCKYASEGPSTGTNVINNNNNNSTTSPQDLS---TASGGSSGANDGNNGRPEISPKLSPGSV 183

  Fly   117 -----ESPKIGTPVGSGAIGGVGVNVNVN-------VGVGVGYPVGVVPQTPDGMDSVPE----- 164
                 .|.|.|.|  |.|:.....|.|.:       |.:.:..|......:.|  ||..|     
Mosquito   184 VESVSRSLKSGNP--STAVSSSSTNNNTSNISNRNQVNLPLASPEEESEASDD--DSGTEGGSSQ 244

  Fly   165 ----------------YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLEL 213
                            |||||.....:.:.|              .||..:|.||:||..|.|||
Mosquito   245 GGGGSSSKKGGPPPHIYPWMKRVHIGQSTVN--------------ANGETKRQRTSYTRYQTLEL 295

  Fly   214 EKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ 256
            |||||||:||.|.||||||.:|.|||||:|:||||||||.|::
Mosquito   296 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 40/55 (73%)
ScrXP_311616.2 None

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