Protein Alignment pb and Cdx4

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_031700.1
• Gene: Cdx4 / 12592
• MGIID: 88362
• Length: 282
• Species: Mus musculus
• Alignment Length: 275
• Identity: 78/275 - (28%)
• Similarity: 107/275 - (38%)
• Gaps: 56/275 - (20%)

  Fly    38 GGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGFIN 102
            ||...|| ||..||.|..:  |.......|..|..:....|: |.|........|.:.
Mouse    22 GGSSTAG-VGTSGGSGSPL--PASNFTAAPVYPHYVGYPHMS-NMDPHGPSLGAWSSP------- 75

  Fly   103 SQPSMAEFLNHLSP------------ESPKIGTP----VG--SGAIGGVGVNVNVNVGVGVGYPV 149
            ..|...::..:..|            .||..|:|    :|  |||..|..:....:..: |....
Mouse    76 YSPPREDWSTYPGPPSTMGTVPMNDMTSPVFGSPDYSTLGPTSGASNGGSLPDAASESL-VSLDS 139

  Fly   150 GVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELE 214
            |....|.........|.||  :||.:.:.....:               .:.|..||:.|.||||
Mouse   140 GTSGATSPSRSRHSPYAWM--RKTVQVTGKTRTK---------------EKYRVVYTDHQRLELE 187

  Fly   215 KEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDS 279
            ||||.|:|:...|:.|:|.:|.|:|||||:||||||.|.::....|....:|    .|...||||
Mouse   188 KEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFEN----TGGSVQSDS 248

  Fly   280 NSNSKKSCQGCELPS 294
            .|.|..     |||:
Mouse   249 GSISPG-----ELPN 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	31/55 (56%)
Cdx4	NP_031700.1	Caudal_act	13..168	CDD:461413	35/159 (22%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	13..36		8/14 (57%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	98..156		12/58 (21%)
		Homeodomain	173..228	CDD:459649	31/54 (57%)