Protein Alignment pb and Msx3

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_446164.1
• Gene: Msx3 / 114504
• RGDID: 620932
• Length: 204
• Species: Rattus norvegicus
• Alignment Length: 171
• Identity: 53/171 - (30%)
• Similarity: 70/171 - (40%)
• Gaps: 47/171 - (27%)

  Fly    93 MTASEGGFINSQP------SMAEFLNHLSPESPKIG--TPVGSGAIGGVGVNVNVNVGVGVGYPV 149
            :.|..||.|...|      |:.|.......||.::|  .|.|:...|              .:|.
  Rat    13 LEARGGGHIEQGPLPFSVESLLEAERVRGSESGELGEERPPGASKPG--------------AWPP 63

  Fly   150 GVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELE 214
            .|....|....|.|... :::.||:||.                        ||.:|..|||.||
  Rat    64 PVAHSCPPRAPSPPPCT-LRKHKTNRKP------------------------RTPFTTAQLLALE 103

  Fly   215 KEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 255
            ::||..:||....|.|.::||.|||.|||:||||||.|.||
  Rat   104 RKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 144

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	29/55 (53%)
Msx3	NP_446164.1	Homeodomain	88..144	CDD:459649	31/79 (39%)