DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and LBX1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_006553.2 Gene:LBX1 / 10660 HGNCID:16960 Length:281 Species:Homo sapiens


Alignment Length:245 Identity:71/245 - (28%)
Similarity:87/245 - (35%) Gaps:72/245 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 GYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQL 210
            |..|.|: |..:|.|.:..:...:..|..|||                        |||:||.|:
Human    98 GLEVSVL-QAAEGRDGMTIFGQRQTPKKRRKS------------------------RTAFTNHQI 137

  Fly   211 LELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDD 275
            .||||.|.:.|||....|.:||..|.||..||..||||||.|.||.......|.::...| |...
Human   138 YELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKL-GPSG 201

  Fly   276 QSD------SNSNSKKSC---QGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAG--NLTPNSS 329
            |.|      ...||:.:.   .||         ..:.||..:...|......|.||  .|:|.|.
Human   202 QMDIVALAELEQNSEATAGGGGGC---------GRAKSRPGSPVLPPGAPKAPGAGALQLSPASP 257

  Fly   330 LETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDD 379
            |                      ....|||....|| ||...|.|   ||
Human   258 L----------------------TDQPASSQDCSED-EEDEEIDV---DD 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 29/55 (53%)
LBX1NP_006553.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
Homeodomain 126..182 CDD:459649 32/79 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..281 23/101 (23%)
Blue background indicates that the domain is not in the aligned region.

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