DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Hoxb2

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_598793.2 Gene:Hoxb2 / 103889 MGIID:96183 Length:354 Species:Mus musculus


Alignment Length:354 Identity:119/354 - (33%)
Similarity:159/354 - (44%) Gaps:95/354 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 EGGFINSQPSMAEFL-----------------NHLSPESPKI-----GTPVGSGAIGGVGVNVNV 139
            |.||||||||:||.|                 :.|.|..|.:     ...:|:..:...|.....
Mouse     8 EIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPLEQTFPSLQLGASTLQRPGSQKQA 72

  Fly   140 NVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNN-------------NNQGDNSITEF 191
            ..|..:..| ..:|..|    ..||:|||||||:::|.|.:             :..|..|....
Mouse    73 GDGPALRSP-PPLPVAP----PAPEFPWMKEKKSTKKPSQSAASPSPAASSVRASEVGSPSDGPG 132

  Fly   192 VPENG--LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHK 254
            :||.|  ..||||||||||||||||||||||||||||||:||||.||||||||||||||||||||
Mouse   133 LPECGGSGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 197

  Fly   255 RQTLSKTDDEDNKDSLKGDDDQ---------SDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNN 310
            |||..:...|.........||.         |..:..:.:..:.|..|::       .::|....
Mouse   198 RQTQHREPPEGEPGGPSAQDDAGEPAEEPTVSPGDVATHRLREACFHPAE-------AAQGPRGA 255

  Fly   311 TPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSAS------------------------NVIS 351
            .|||          .|.::||: :.::..|.|.:.|.                        |..:
Mouse   256 PPSA----------LPATTLES-VGASSPGCTMLRAGGRQSEPLPEDACPERQDSPFLPDLNFFA 309

  Fly   352 ADSSVASSVSLDEDIEES--SPIKVKKKD 378
            |||.:..|..|...::.|  ||:...:::
Mouse   310 ADSCLQMSGGLSPSLQGSLDSPVPFSEEE 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 70/120 (58%)
Homeobox 202..254 CDD:278475 49/51 (96%)
Hoxb2NP_598793.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..143 25/108 (23%)
Antp-type hexapeptide 92..97 3/4 (75%)
Homeobox 145..197 CDD:278475 49/51 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..231 12/37 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 246..295 10/66 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849157
Domainoid 1 1.000 117 1.000 Domainoid score I5885
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 1 1.000 - - otm42860
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45664
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6877
SonicParanoid 1 1.000 - - X2356
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.830

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