DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Hoxa1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_037207.2 Gene:Hoxa1 / 103690132 RGDID:11414885 Length:334 Species:Rattus norvegicus


Alignment Length:320 Identity:92/320 - (28%)
Similarity:122/320 - (38%) Gaps:103/320 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QVQTGQTSLPVG------GCGGAGVVGGVGGVGVSVGQPGIGQQ-----GVPP-VPSVLMVNKMT 79
            |..|.|||..:|      .||.:   .|........|..|:.|:     |.|| .|:|...|..:
  Rat    75 QPATYQTSGNLGVSYSHSSCGPS---YGAQNFSAPYGPYGLNQEADVSGGYPPCAPAVYSGNLSS 136

  Fly    80 PNCDKRSADTAYWMTASEGGFINSQP-------------SMAEFLNHLSP---------ESPKIG 122
            |..........|     .||.:.|..             ::|.:.|.|||         .||  .
  Rat   137 PMVQHHHHHQGY-----AGGTVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSP--A 194

  Fly   123 TPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNS 187
            :...|.|                        ||         :.|||.|:...|:......|   
  Rat   195 SETSSPA------------------------QT---------FDWMKVKRNPPKTGKVGEYG--- 223

  Fly   188 ITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMK 252
               :|   |.|..:||.:|..||.||||||||||||.|.||:||||||.|.|.|||:||||||||
  Rat   224 ---YV---GQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMK 282

  Fly   253 HKRQTLSKTDDEDNKDSL--------KGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNS 304
            .|::         .|:.|        .|.|::::.:|....|......|:....|:.:.|
  Rat   283 QKKR---------EKEGLLPISPATPPGSDEKTEESSEKSSSSPSAPSPASSTSDTLTTS 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 39/55 (71%)
Hoxa1NP_037207.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..82 3/6 (50%)
Interaction with OGT. /evidence=ECO:0000250|UniProtKB:P09022 74..202 32/160 (20%)
COG5576 175..>285 CDD:227863 58/153 (38%)
Antp-type hexapeptide 203..208 2/13 (15%)
Homeodomain 232..285 CDD:459649 39/52 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..334 13/63 (21%)

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