DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxa7

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001363856.1 Gene:hoxa7 / 101734257 XenbaseID:XB-GENE-483655 Length:207 Species:Xenopus tropicalis


Alignment Length:121 Identity:51/121 - (42%)
Similarity:64/121 - (52%) Gaps:27/121 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 YPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRI 229
            ||||:.....||                       |.|..||..|.||||||||||:||.|.|||
 Frog   111 YPWMRSSGPDRK-----------------------RGRQTYTRYQTLELEKEFHFNRYLTRRRRI 152

  Fly   230 EIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKK 285
            |||.:|.|||||:|:||||||||.|::  .|.:.....|:  |:|..:.:.:...|
 Frog   153 EIAHALCLTERQIKIWFQNRRMKWKKE--HKEESGQTPDA--GEDSTAPTTTAEDK 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 39/55 (71%)
hoxa7NP_001363856.1 Homeodomain 122..178 CDD:459649 40/78 (51%)

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