Protein Alignment pb and Hoxa4

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 311
• Identity: 98/311 - (31%)
• Similarity: 131/311 - (42%)
• Gaps: 76/311 - (24%)

  Fly    36 PVGGCGGAGVVGGVGGVGVSVGQPGIGQ-QGVPPVPSVLMVNKMTPNCDKRSADTAYWMTAS--- 96
            |.||.|     ||.||||   |.||..: |..|.:|:        ||........||:...:
  Rat    25 PHGGPG-----GGDGGVG---GGPGYPRPQSSPHLPA--------PNPHAARQTPAYYAPRAREP 73

  Fly    97 --EGGFINSQPSMAEFL----------------NHLSPESPKIGTPVGSGAIGGVGVNVNVNVGV 143
              .||...:..:...:.                .|.|| :|:...|....|.|.....|... |.
  Rat    74 SYHGGLYPAPAAACPYACRGASPARPEQSPAPGAHPSP-APQPPAPPRRCAPGPTTPAVATG-GS 136

  Fly   144 GVGYPVGVV---PQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAY 205
            ....|:.:.   |..|.|.:.| .|||||:...|..:.:.|             .|.|:|.||||
  Rat   137 APACPLLLADQGPAGPKGKEPV-VYPWMKKIHVSAVNPSYN-------------GGEPKRSRTAY 187

  Fly   206 TNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSL 270
            |..|:||||||||||:||.|.||||||.:|.|:|||||:||||||||.|:         |:|  |
  Rat   188 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK---------DHK--L 241

  Fly   271 KGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSA 321
            .....:|.:.:::.....|        ...|.:...|.:..|.|:...||:
  Rat   242 PNTKMRSSNPASAPAGPPG--------KAQTHSPHPHPHPLPGASTPIPSS 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	41/55 (75%)
Hoxa4	NP_077326.1	Homeodomain	181..237	CDD:459649	41/55 (75%)