DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxb1

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_004918719.1 Gene:hoxb1 / 100493290 XenbaseID:XB-GENE-485772 Length:304 Species:Xenopus tropicalis


Alignment Length:319 Identity:91/319 - (28%)
Similarity:128/319 - (40%) Gaps:93/319 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QTSLPVGGCGGAG---------VVGGVGGVGVSVGQPGIGQQGVPPVPS--VLMVNKMT----PN 81
            |.:.|...|.|..         ||||..||...:.|.   ....||.||  |...|.:|    ..
 Frog    32 QGTPPFPACPGTNDIYNGDGRFVVGGGNGVPSHLHQQ---NPSYPPQPSAGVPYTNSLTSYTPQT 93

  Fly    82 CDKRSADTAYWMTASEG---------------------GFINSQPSMAEFLNHLSPESPKIGTPV 125
            |::.....||....::|                     |:..:.|..|::..|          |.
 Frog    94 CNQAYGHQAYASPDADGIYFQQTAYCSNTGANSNSYSDGYCGAVPGPAQYQQH----------PY 148

  Fly   126 GSGAIGGVGVNVNVNVGVGVGYPVGVV-----PQTPDGMDSVPE--YPWMKEKKTSRKSSNNNNQ 183
            |....|.:....|         |..::     |..| ...::|.  :.|||.|:...|:      
 Frog   149 GQEHQGLLQAYHN---------PPSMLHEEKEPSCP-SEQALPNHTFDWMKVKRNPPKT------ 197

  Fly   184 GDNSITEFVPENGLPRR---LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVW 245
                 |....:.||..:   :||.:|..||.||||||||||||.|.||:||||:|:|.|.|||:|
 Frog   198 -----TAKPVDFGLSTQQNTIRTNFTTKQLTELEKEFHFNKYLTRARRVEIAATLELNETQVKIW 257

  Fly   246 FQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNS 304
            |||||||.|::..........|.|:|.:.:.||.:|::.             ||::.||
 Frog   258 FQNRRMKQKKREREGLAPSAIKGSMKENGEMSDLSSSTS-------------PDASPNS 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 49/108 (45%)
Homeobox 202..254 CDD:278475 38/51 (75%)
hoxb1XP_004918719.1 PTZ00395 <12..>147 CDD:185594 26/127 (20%)
Homeobox 214..267 CDD:365835 38/52 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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