DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and hoxc5

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_002936695.2 Gene:hoxc5 / 100487879 XenbaseID:XB-GENE-485672 Length:225 Species:Xenopus tropicalis


Alignment Length:237 Identity:73/237 - (30%)
Similarity:95/237 - (40%) Gaps:52/237 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GGAGVVGGV-------GGVGVSVGQPGIGQQ---GVPPVPSVLMVNKMTPNCDKRSADTAYWMTA 95
            |..|.|..|       .|:.:|:..|..|..   ....:||....|...|:|....: :.:.:..
 Frog    25 GNYGSVSEVPSSRYCYSGLDLSITFPSPGSSNSLSALDMPSNPNANSERPSCTVMGS-SGHTVGR 88

  Fly    96 SEGGFINS----QPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTP 156
            .|...:||    |.:....|...|.....|.|......                  |.|..||..
 Frog    89 GEQSALNSGIYNQKAATTSLEERSKGIESIKTEPAQST------------------PQGGQPQQQ 135

  Fly   157 DGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNK 221
            ........||||.:...|.::..                   :|.||:||..|.||||||||||:
 Frog   136 QQQQPPQIYPWMTKLHMSHETDG-------------------KRSRTSYTRYQTLELEKEFHFNR 181

  Fly   222 YLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDD 263
            ||.|.||||||.:|.|.|||:|:||||||||.|:.|..|:.|
 Frog   182 YLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDTKVKSKD 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 45/96 (47%)
Homeobox 202..254 CDD:278475 38/51 (75%)
hoxc5XP_002936695.2 Homeobox 161..215 CDD:395001 38/53 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.