Protein Alignment pb and hoxc5

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: XP_002936695.2
• Gene: hoxc5 / 100487879
• XenbaseID: XB-GENE-485672
• Length: 225
• Species: Xenopus tropicalis
• Alignment Length: 237
• Identity: 73/237 - (30%)
• Similarity: 95/237 - (40%)
• Gaps: 52/237 - (21%)

  Fly    41 GGAGVVGGV-------GGVGVSVGQPGIGQQ---GVPPVPSVLMVNKMTPNCDKRSADTAYWMTA 95
            |..|.|..|       .|:.:|:..|..|..   ....:||....|...|:|....: :.:.:..
 Frog    25 GNYGSVSEVPSSRYCYSGLDLSITFPSPGSSNSLSALDMPSNPNANSERPSCTVMGS-SGHTVGR 88

  Fly    96 SEGGFINS----QPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTP 156
            .|...:||    |.:....|...|.....|.|......                  |.|..||..
 Frog    89 GEQSALNSGIYNQKAATTSLEERSKGIESIKTEPAQST------------------PQGGQPQQQ 135

  Fly   157 DGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNK 221
            ........||||.:...|.::..                   :|.||:||..|.||||||||||:
 Frog   136 QQQQPPQIYPWMTKLHMSHETDG-------------------KRSRTSYTRYQTLELEKEFHFNR 181

  Fly   222 YLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDD 263
            ||.|.||||||.:|.|.|||:|:||||||||.|:.|..|:.|
 Frog   182 YLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDTKVKSKD 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	39/55 (71%)
hoxc5	XP_002936695.2	Homeodomain	159..215	CDD:459649	39/55 (71%)