DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and ventx3.2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001123388.1 Gene:ventx3.2 / 100170150 XenbaseID:XB-GENE-483077 Length:282 Species:Xenopus tropicalis


Alignment Length:199 Identity:57/199 - (28%)
Similarity:81/199 - (40%) Gaps:53/199 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 INSQPSMAEFLNHLSPESP----------KIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQT 155
            :..:|....:|:..|...|          |.|.|           ::..|....|..|..|:..|
 Frog     1 MEKRPYSVAWLSESSQRKPLCTNVDLLGYKSGNP-----------DLPPNREYNVSLPSRVILPT 54

  Fly   156 PD--------------GMDSVPE------YPWMKEKKTSRKSS------NNNNQ------GDNSI 188
            ||              |..|.|.      :|..:|..|||::|      ::.:|      ..|..
 Frog    55 PDYREKENYCGRNVHNGERSPPVRDQLHFHPAPQELTTSRRTSIEVSAESSTDQRVIGMTDTNKK 119

  Fly   189 TEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKH 253
            |:.|.:.....|.||.:|..||.||||.|..|:|:....:..::..|.|:|.|:|.||||||||.
 Frog   120 TKSVCDEDAASRARTKFTAEQLEELEKSFKENRYIGSSEKRRLSKVLKLSENQIKTWFQNRRMKF 184

  Fly   254 KRQT 257
            ||||
 Frog   185 KRQT 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/55 (47%)
ventx3.2NP_001123388.1 Homeodomain 131..186 CDD:459649 26/54 (48%)

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