Protein Alignment pb and cdx1b

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001092232.1
• Gene: cdx1b / 100004956
• ZFINID: ZDB-GENE-070615-29
• Length: 255
• Species: Danio rerio
• Alignment Length: 275
• Identity: 75/275 - (27%)
• Similarity: 109/275 - (39%)
• Gaps: 74/275 - (26%)

  Fly    55 SVGQPGIG---QQGVPPVP------SVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEF 110
            ||..|.:.   |..||..|      ....|..:|.| |...:.|..|..|       ..|...|:
Zfish    17 SVRHPSLNLNPQNFVPAPPQYPDFTGYHHVPGITTN-DPHHSQTGSWNPA-------YPPPREEW 73

  Fly   111 LNHLSPESPKIGTPVGSGAIGGVG--------------VNVNVNVGVGVGYPVGVVPQTPDGMDS 161
                :|..|  |:.|.|.:.|.:|              :..::|..||        ..:|:....
Zfish    74 ----TPYGP--GSGVSSSSTGQLGFSPPEFSSVQTPGLLQSSINSSVG--------QLSPNAQRR 124

  Fly   162 VPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRP 226
            .| |.||:.......|.......|              :.|..||:.|.||||||||:::|:...
Zfish   125 NP-YDWMRRSVPPASSGGKTRTKD--------------KYRVVYTDHQRLELEKEFHYSRYITIR 174

  Fly   227 RRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCE 291
            |:.|:|.:|.|:|||||:||||||.|.::         .||..::    |....|.:..:..|..
Zfish   175 RKAELATALSLSERQVKIWFQNRRAKERK---------INKKKMQ----QPQPASTTTPTPPGSA 226

  Fly   292 LPSDDIPDSTSNSRG 306
            ||. ::|..||:|.|
Zfish   227 LPG-NVPMVTSSSSG 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	30/55 (55%)
cdx1b	NP_001092232.1	Caudal_act	13..140	CDD:461413	31/145 (21%)
		Homeodomain	148..203	CDD:459649	30/54 (56%)