Protein Alignment lab and Hoxa6

DIOPT Version :10

• Sequence 1: NP_476613.1
• Gene: lab / 40817
• FlyBaseID: FBgn0002522
• Length: 629
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 266
• Identity: 72/266 - (27%)
• Similarity: 82/266 - (30%)
• Gaps: 138/266 - (51%)

  Fly   330 SPAAHQQHHQNSV------------------------SPNGGMNRQQRGGVISPGS--------- 361
            ||..:||  .|||                        ||:|  |.:|||    ||.
  Rat    54 SPCFYQQ--SNSVLACNRASYEYGASCFYSDKDLSGASPSG--NSKQRG----PGDYLHFSPEQQ 110

  Fly   362 -STSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQ 425
             ...||:......|...|..|..:     |.|.|||                            :
  Rat   111 YKPDSSSVQGKALHEEGTDRKYTS-----PVYPWMQ----------------------------R 142

  Fly   426 LDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSG 490
            ::.|.|...|..|
  Rat   143 MNSCAGAVYGSHG---------------------------------------------------- 155

  Fly   491 LSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMK 555
                       ..||..:|..|..||||||||||||||.|||||||.|.|.|.|:||||||||||
  Rat   156 -----------RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209

  Fly   556 QKKRVK 561
            .||..|
  Rat   210 WKKENK 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lab	NP_476613.1	Homeodomain	505..558	CDD:459649	38/52 (73%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	39/55 (71%)