DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxa11a

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001428668.1 Gene:hoxa11a / 58061 ZFINID:ZDB-GENE-000823-8 Length:284 Species:Danio rerio


Alignment Length:307 Identity:77/307 - (25%)
Similarity:111/307 - (36%) Gaps:96/307 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 HGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISP 359
            :.:..||....|.::...:.....|..:..|   :.|.||....::||      :|:....|.:.
Zfish    46 YSYASNLPQVQHVREVTFRDYAIDPSTKWPH---RGPLAHCYPSEDSV------HRECLPAVTTV 101

  Fly   360 GS------------STSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPAS 412
            |.            |||::|||||                     .:..:.||...|||      
Zfish   102 GEMFPKNNASAYYHSTSNTTSASN---------------------FYGNVGRNGVLPQA------ 139

  Fly   413 GIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAH 477
             .....|          ...||..|.|.|.........|       |.|::...|......|...
Zfish   140 -FDQFFD----------TAYGGSDSVVDNDYAARDKMHS-------SKQSTPAPAPEQQPEGKER 186

  Fly   478 PNGMGVGLGSGSGLSSCSLSSNTN-------NSG------RTNFTNKQLTELEKEFHFNRYLTRA 529
            |.           .||...||..|       |||      |..:|..|:.|||:||.|:.|:.:.
Zfish   187 PE-----------TSSPESSSGNNEEKTSGANSGPRFRKKRCPYTKFQIRELEREFFFSVYINKE 240

  Fly   530 RRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTS 576
            :|::::..|.|.:.||||||||||||:||      :..|.|..:||:
Zfish   241 KRLQLSRMLNLTDRQVKIWFQNRRMKEKK------LNRDRLQYYSTN 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 25/52 (48%)
hoxa11aNP_001428668.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..214 14/68 (21%)

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