DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxb10a

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571616.1 Gene:hoxb10a / 58056 ZFINID:ZDB-GENE-000328-2 Length:279 Species:Danio rerio


Alignment Length:244 Identity:65/244 - (26%)
Similarity:90/244 - (36%) Gaps:79/244 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 PQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTS----ASNGAHPASTQSKSP 383
            |:.|...|.:..|..|..|:|              :|.|.|.:...    |.......|..|:|.
Zfish    99 PESPSLSSHSDSQHLHSLSLS--------------APCSETDNKHDMQYLAMESTKYPSQWSESR 149

  Fly   384 NHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGG 448
            .:.|.|.|....|..::..:|.                 |.|.|..|                 |
Zfish   150 TNRSIITTLSISQRSKDDIEPN-----------------NLQTDFTR-----------------G 180

  Fly   449 NGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQL 513
            :.:|     ......:.:.|:|        ||.              ||:......|..::..|:
Zfish   181 DKTP-----REKTQDVTLENAA--------NGW--------------LSAKAGRKKRCPYSKHQI 218

  Fly   514 TELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKE 562
            .||||||.||.||||.||:||:.::.|.:.||||||||||||.||..:|
Zfish   219 LELEKEFLFNMYLTRERRLEISRSINLTDRQVKIWFQNRRMKLKKMTRE 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 31/52 (60%)
hoxb10aNP_571616.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..112 3/12 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..187 7/58 (12%)
Homeodomain 207..263 CDD:459649 31/55 (56%)

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