DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and hoxa9b

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571608.1 Gene:hoxa9b / 58048 ZFINID:ZDB-GENE-000823-2 Length:258 Species:Danio rerio


Alignment Length:320 Identity:80/320 - (25%)
Similarity:115/320 - (35%) Gaps:89/320 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 LDAMDSLGMHAHMHHGLPHGHLGNLANNPHQQQPQVQQQQQQ------PHQQPQHPQNQSPAAHQ 335
            :..:.:|..:|..|  |||.:..:||.. ....|.||||.::      ..|:|            
Zfish     1 MSTLGTLSYYADSH--LPHENDDHLAPR-FSSGPVVQQQSRELTLLEYSEQEP------------ 50

  Fly   336 QHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRN 400
                        ...|.:..:.....|....|.||...||......|...|.......|      
Zfish    51 ------------YTFQAKSSIFGASWSPVQPTGASIAYHPYIHHPCSTGDSDGASVRPW------ 97

  Fly   401 VPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLI 465
            ..:| .|.||.:|:::  |...:.:|:                        |.:|......::|:
Zfish    98 ALEP-LPALPFTGLST--DTHQDIKLE------------------------PLVGSGECTTHTLL 135

  Fly   466 MANS-------------AAAAGSAHPNGMGVGLGSGSGLSSCS--------LSSNTNNSGRTNFT 509
            :|.:             .|.:..:|...:..........|.|:        |.:.:....|..:|
Zfish   136 VAETDNNTTQTERKVPDDAVSNGSHDEKIPAETKLDLDPSKCNQDNPLSNWLHAKSTRKKRCPYT 200

  Fly   510 NKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPADI 569
            ..|..||||||.||.||:|.||.|:|..|.|.|.||||||||||||.||..|:.  |.||
Zfish   201 KHQTLELEKEFLFNMYLSRDRRYEVARLLNLTERQVKIWFQNRRMKMKKCNKDR--PKDI 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 33/51 (65%)
hoxa9bNP_571608.1 Hox9_act 1..174 CDD:282473 38/232 (16%)
Homeobox 195..248 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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