DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxc1a

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571606.1 Gene:hoxc1a / 58046 ZFINID:ZDB-GENE-000822-2 Length:302 Species:Danio rerio


Alignment Length:335 Identity:101/335 - (30%)
Similarity:122/335 - (36%) Gaps:127/335 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 GMHA------HMHHG----LP------------HGHLGNL-----------------ANNPHQQQ 309
            |.||      |..||    .|            ..|..||                 ||:.....
Zfish    17 GYHATGVMRLHQDHGSTADFPSREDVNNEADFLQYHFTNLCATATGACSKPCEDPGRANSTRPPF 81

  Fly   310 PQVQQQQQQPH-QQPQHPQNQSPAAHQQHHQNSVSPN--------------GGMNRQQRGGVISP 359
            ||.|...:..| .:||.|..|| ...|...:...||:              |.:|..|.......
Zfish    82 PQNQDFYRPVHPNRPQVPSFQS-CREQGLSRKGFSPSSDTFRTFSSAHCELGPVNNTQTEVRTYD 145

  Fly   360 GSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNG 424
            |....|:....|..|.|........||..  |::||:::||  :.:|.|:.. |..|..:.:.|.
Zfish   146 GPVRHSAVEDDNTGHGALNTLNETLHSGK--TFEWMRVRRN--QSRAAKIQL-GKCSDRELKTNH 205

  Fly   425 QLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGS 489
            ..|.......|||                                                    
Zfish   206 GRDSDEDTSSGGS---------------------------------------------------- 218

  Fly   490 GLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRM 554
                           |||||.|||||||||||||:||||||||||||.|||:|||||||||||||
Zfish   219 ---------------RTNFTTKQLTELEKEFHFNKYLTRARRIEIANPLQLSETQVKIWFQNRRM 268

  Fly   555 KQKKRVKEGL 564
            ||||.::|||
Zfish   269 KQKKMLREGL 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 47/51 (92%)
hoxc1aNP_571606.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..224 9/92 (10%)
Homeobox 218..271 CDD:278475 48/119 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577597
Domainoid 1 1.000 105 1.000 Domainoid score I6604
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003011
OrthoInspector 1 1.000 - - otm25194
orthoMCL 1 0.900 - - OOG6_126359
Panther 1 1.100 - - O PTHR45946
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.830

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