DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and msx2a

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001025440.1 Gene:msx2a / 573620 ZFINID:ZDB-GENE-980526-322 Length:257 Species:Danio rerio


Alignment Length:103 Identity:42/103 - (40%)
Similarity:56/103 - (54%) Gaps:19/103 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   494 CSLSSN-TNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQK 557
            |.|..: ||...||.||..||..||::|...:||:.|.|.|.:::|.|.||||||||||||.| .
Zfish   114 CPLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK-A 177

  Fly   558 KRVKE----------------GL-IPADILTQHSTSVI 578
            ||::|                || :|..:.||..|:.:
Zfish   178 KRLQEAELERFKMASKPILHPGLTLPFPLCTQPQTAAL 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 29/52 (56%)
msx2aNP_001025440.1 Homeodomain 123..179 CDD:459649 29/56 (52%)

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