DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxc11b

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_009298848.2 Gene:hoxc11b / 570925 ZFINID:ZDB-GENE-000822-3 Length:306 Species:Danio rerio


Alignment Length:291 Identity:79/291 - (27%)
Similarity:109/291 - (37%) Gaps:80/291 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 PQVQQQQ---------QQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSS 365
            ||.|.:|         .|..|....|...:|:....|..|..|.....:...|..:  |.|:|.:
Zfish    51 PQAQSRQITYSYSTNFTQVPQVRDLPFELNPSGKWHHRGNYSSCYAEEDLVHRDCL--PPSATMT 113

  Fly   366 STSASN-------GAHPASTQSKSPNHS-----SSIPTYKWMQLKRNVPKPQAPKLPASGIASMH 418
            .....|       ..|||.      ||.     |||.       |.||       ||.|      
Zfish   114 EMLMKNENVYNHHHYHPAI------NHPGTGFYSSIG-------KTNV-------LPQS------ 152

  Fly   419 DYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGV 483
               .:..||....|..||| .|| .:..|.:|.|         .|....:|...:.:.....:..
Zfish   153 ---FDRFLDCAHSGADGGS-EGN-CLQKGSSGKP---------ESASQVSSVLRSTADGEKELEC 203

  Fly   484 GLGSGSGLSSCSLSSNTNNSGRTN---------------FTNKQLTELEKEFHFNRYLTRARRIE 533
            ...:.||  |...||.|.|..:|.               :|..|:.|||:||.||.|:.:.:|::
Zfish   204 EKNTTSG--SFETSSGTKNDNQTKSGHSTTPRMRKKRCPYTKFQIRELEREFFFNVYINKEKRLQ 266

  Fly   534 IANTLQLNETQVKIWFQNRRMKQKKRVKEGL 564
            ::..|.|.:.||||||||||||:||..::.|
Zfish   267 LSRILNLTDRQVKIWFQNRRMKEKKLSRDRL 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 26/67 (39%)
hoxc11bXP_009298848.2 None

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