DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and gsx1

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001012251.1 Gene:gsx1 / 449875 ZFINID:ZDB-GENE-041008-135 Length:243 Species:Danio rerio


Alignment Length:113 Identity:53/113 - (46%)
Similarity:60/113 - (53%) Gaps:22/113 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   471 AAAGSAHPNGMGVGLGSGSGL--------------------SSCSLSSNTNNSGRTNFTNKQLTE 515
            :|....|....||.|.|||||                    ||..|.|:...  ||.||:.||.|
Zfish    88 SALSRQHSTSSGVNLNSGSGLYQAAYPVPDPRQFHCISIENSSSQLQSSKRM--RTAFTSTQLLE 150

  Fly   516 LEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEG 563
            ||:||..|.||:|.||||||..|.|:|.||||||||||:|.||..|.|
Zfish   151 LEREFTSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKSG 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 35/51 (69%)
gsx1NP_001012251.1 Homeobox 140..192 CDD:278475 35/51 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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