DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and gsx1

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001012251.1 Gene:gsx1 / 449875 ZFINID:ZDB-GENE-041008-135 Length:243 Species:Danio rerio


Alignment Length:113 Identity:53/113 - (46%)
Similarity:60/113 - (53%) Gaps:22/113 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   471 AAAGSAHPNGMGVGLGSGSGL--------------------SSCSLSSNTNNSGRTNFTNKQLTE 515
            :|....|....||.|.|||||                    ||..|.|:...  ||.||:.||.|
Zfish    88 SALSRQHSTSSGVNLNSGSGLYQAAYPVPDPRQFHCISIENSSSQLQSSKRM--RTAFTSTQLLE 150

  Fly   516 LEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEG 563
            ||:||..|.||:|.||||||..|.|:|.||||||||||:|.||..|.|
Zfish   151 LEREFTSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKSG 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 35/52 (67%)
gsx1NP_001012251.1 Homeodomain 137..193 CDD:459649 35/57 (61%)

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